Sequence
atgc intronic sequence ATGC exonic sequenceAACGGGGGCGCTGATTGGGATGGTGGAATGCCGCATTTGCCAGGAGGAGGACCTCGCCAAGAACCTCGAGAGCCCCTGCGCTTGTAGCGGTAGCCTCAAGgtatgttgtttcttctatccaagcgagcagttcttgttccaatccatattaacgataaaattatttttgcctcaatttcatgggatcgttgttgatatat...
Basic information
species | Oryza sativa |
transcript | LOC_Os02g36740.7 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g36740.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G118957_T04 (Zea mays), 5'ss of exon 3
AACGGGGGCGCTGATTGGGATGGTGGAATGCCGCATTTGCCAGGAGGAGGACCTCGCCAAGAACCTCGAGAGCCCCTGCGCTTGTAGCGGTAGCCTCAAGgtatgt----tgtttcttctatccaagcgagcagttcttgttccaatccatattaacgataaaattatttttgcctcaatttcatgggatcgttg-ttgatatat
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AATGAAGGCGCTGGCTGGGATGGTGGAGTGCCGCATTTGCCAGGAGGAGGACCTCGCAAAGAACCTCGAGAGCCCCTGTGCTTGCAGCGGCAGCCTCAAGgtgcgtgctgccttatttctcttcaaaccagagattctggatccatcccatgttgcttatg-----ctgtttgcctctggttccttctattgtcaattcatagat
upper sequence: LOC_Os02g36740.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G156734_T01 (Zea mays), 5'ss of exon 1
AACGGGGGCGCTGATTGGGATGGTGGAATGCCGCATTTGCCAGGAGGAGGACCTCGCCAAGAACCTCGAGAGCCCCTGCGCTTGTAGCGGTAGCCTCAAGgtatgt--tg--tttcttctatccaagcgagcagttcttgttccaatccatattaacgataaaattatttttgcctcaatttcatgggatcgttg-ttgatatat
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AACAGAGGCGCTGATTGGGATGGTGGAGTGCCGCATTTGCCAGGAGGAGGACCTCAGGAAGAACCTCGAGAGCCCCTGCGCTTGCAACGGCAGCCTCAAGgtgcgtgctggcttacttctcttcaaaccagagattctgggtcca--tcatcccatcttgcttatgctgtttgcctctggttcattctattgtcaattcata---
upper sequence: LOC_Os02g36740.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA04G33580.2 (Glycine max), 5'ss of exon 2
AACGGGGGCGCTGATTGGGATGGTGGAATGCCGCATTTGCCAGGAGGAGGACCTCGCCAAGAACCTCGAGAGCCCCTGCGCTTGTAGCGGTAGCCTCAAGgtatgttgtttct---tctatccaagcgagcagttcttgttccaatccatattaacgataaaattatttttgcctcaatttcatgggatcgttgttgatatat
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AAAAGAAGACCTTATCCAAATGGTGGAATGTCGCATTTGCCAGGAGGATGATACCCTTCAAAATTTGGACATACCTTGTGCTTGCAGTGGAACCTTGAAGgtattcttatactaaatattcctatttaagcaatgaggatagtaagcaatgagaacagtagaatggtagattgctgctttctatgagatgatgagttgtg---
upper sequence: LOC_Os02g36740.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA06G20860.2 (Glycine max), 5'ss of exon 2
AACGGGGGCGCTGATTGGGATGGTGGAATGCCGCATTTGCCAGGAGGAGGACCTCGCCAAGAACCTCGAGAGCCCCTGCGCTTGTAGCGGTAGCCTCAAGgtatgttgtttctt--ctatccaagc-gagcagttcttgttccaatccatattaacgataaaattatttttgcct-caatttcatgggatcgttgttgatatat
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AGAAGAAGACCTTATCAAAATGGTGGAATGTCGCATTTGCCAGGAGGATGATACCCTTCAAAATTTGGACATACCCTGTGCTTGCAGTGGAACTTTGAAGgtattcttatactaaactttccaatttgagcaatgaggagactaagcaat---gaaattgaggtttttttggattgttgctttctgtatacattcttagtaag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|3767112|gb|AU031222.1|AU031222EST: CGCTTGTAGCGGTTAGCCTCAAG TACGCTCATAGAGAATGTGTGCAAAGATGGTGCAATGAGAAAGGAGACATA
genomic: CGCTTGTAGCGG-TAGCCTCAAGgtatgttgtt ... tattgtgcagTACGCTCATAGAGAATGTGTGCAAAGATGGTGCAATGAGAAAGGAGACATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACGGGGGCGCTGATTGGGATGGTGGAATGCCGCATTTGCCAGGAGGAGGACCTCGCCAAGAACCTCGAGAGCCCCTGCGCTTGTAGCGGTAGCCTCAAGgtatgttgtttcttctatccaagcgagcagttcttgttccaatccatattaacgataaaattatttttgcctcaatttcatgggatcgttgttgatatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC