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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCATGCAACGTCAAAGACAAAGACAGgttggtgactgttcgaaatccttttgttcttttatgtatccgcaatccacaggcaaaaaatattccagattatctatagcttgctattttgcacttttga...

Basic information

species Oryza sativa
transcript LOC_Os02g36740.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g36740.4 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G156734_T01 (Zea mays), 5'ss of exon 6
--------------------------------------------------------------TATCATGCAACGTCAAAGACAAAGACAGgttggtgact--gttcgaaatccttttgttcttttatgtatccgcaatccacaggcaaaaaatattccag-attatctatagcttgctattttgcacttttga
                                                              ||||||||| ||||||||||||||||||||||||| ||  || | ||      |  |||||| |||| |   |  |    || | |   |      || |  |   ||  |  | || | | ||       
CTATTTCTTTTGAGAGCGGCTGGATTTTTGCTGCCATGCTATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggctcggtgctaatggaaatgtttctttcatgtgtatactgtattgagtctattgactcctgaggaaaaagaattccaggatactattcatacc---

upper sequence: LOC_Os02g36740.4 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G118957_T05 (Zea mays), 5'ss of exon 3
--------------------------------------------------------------TATCATGCAACGTCAAAGACAAAGACAGgttggtgact-------gttcgaaatccttttgttc------ttttatgtatccgcaatccacaggcaaaaaatattccagattatctatagcttgctattttgcacttttga
                                                              ||||||||| ||||||||||||||||||||||||| ||         | |||||  || | ||       | |  |||||   |  |  || |  || || |   | | | ||| |||| || || ||             
CTATTTCTTTTGAGAGCCGCTGGATTTTTGCTGCCATGCTATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggctcggtgccaatggaaatgtttctctttcatgtgtatactgtattgacttttgacggaaaagaattccacgaaactatttatacctagc-atg------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88269118|gb|CI380416.1|CI380416
EST:     GTATCATGCAACGTCAAAGACAAAGACAG                         GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
genomic: GTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: gi|33809701|gb|CF330740.1|CF330740
EST:     GTCAAAGACAAAGACAG                         GAAGAAGCAATGCTTCTACCAACTGAGGTGGCAATCATACTCCACCGAAAT
genomic: GTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: gi|88441525|gb|CI554749.1|CI554749
EST:     GTATCATGCAACGTCAAAGACAAAGACAG                         GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
genomic: GTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: gi|3767600|gb|AU031627.1|AU031627
EST:     GTATCATGCAACGTCAAAGACCAAAGACAG                         GAAGAAGCAATGCTTCTACCCAACTGAAGTGGCAATCATACTCCACCGAA
genomic: GTATCATGCAACGTCAAAGA-CAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTA-CCAACTGAAGTGGCAATCATACTCCACCGAA
EST: gi|88479704|gb|CI416975.1|CI416975
EST:     ACGTCAAAGACAAAGACAG                         GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
genomic: ACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT