1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATGGCTGCCGCTCAACACCGTTTACTTGAAGATGAGTATGATGAATATACTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtcttaaaagggttagcagtttatattctagaaacatgcaatattttaccttctgttaatgtaaattcatgatcattaaggaggacaatcttgtca...
species | Oryza sativa |
transcript | LOC_Os02g36740.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGCTCCATATTTCTAATT CTAAGGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|29663450|gb|CB659725.1|CB659725
genomic: CGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|58602522|gb|CK013050.1|CK013050
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|29677125|gb|CB673400.1|CB673400
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|33793334|gb|CF322548.1|CF322548
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|5803574|gb|AI978544.1|AI978544
genomic: CTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|29686718|gb|CB682993.1|CB682993
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|27576199|gb|CA998893.1|CA998893
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|27578072|gb|CB000767.1|CB000767
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|29686717|gb|CB682992.1|CB682992
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|27554462|gb|CA998362.1|CA998362
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|88243846|gb|CI242968.1|CI242968
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGATEST: gi|58695300|gb|CK083987.1|CK083987
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
EST: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATT CTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
genomic: CTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtctta ... gtctatccagCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTAGTAGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGCTGCCGCTCAACACCGTTTACTTGAAGATGAGTATGATGAATATACTGCAACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTgtaagtcttaaaagggttagcagtttatattctagaaacatgcaatattttaccttctgttaatgtaaattcatgatcattaaggaggacaatcttgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC