1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agttgtcgaagctgttatactagacagataaattttattgtctatcacaatcctttctattgcaaagagatatctcacacatttcctttgctttccccagGAGCAGCAGGTGTTGAGAAGAGCCTGGGATTAGGGAGGAATGCGGGAAGCCAGCAAGGCATG
species | Oryza sativa |
transcript | LOC_Os02g36264.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATACCAAAGCAGTTCAGCAGAGCGCCTCGTATTCGTGTCAGTATAAGAG GAGCAGCAGGTGTTGAGAAGAGCCTGGGATTAGGGAGGAATGCGGGAAGCC
genomic: AATACCAAAGCAGTTCAGCAGAGCGCCTCGTATTCGTGTCAGTATAAGAGgtatgaggta ... ctttccccagGAGCAGCAGGTGTTGAGAAGAGCCTGGGATTAGGGAGGAATGCGGGAAGCC
cacaatcctttctattgcaaagagatatctcacacatttcctttgctttccccagGAGCAGCAGGTGTTGAGAAGAGCCTGGGATTAGGGAGGAATGCGGGAAGCCAGCAAGGCATG
atctcac putative branch site (score: 6)
cacatttcctttgctt CT-rich tract
tttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgtcgaagctgttatactagacagataaattttattgtctatcacaatcctttctattgcaaagagatatctcacacatttcctttgctttccccagGAGCAGCAGGTGTTGAGAAGAGCCTGGGATTAGGGAGGAATGCGGGAAGCCAGCAAGGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - -agctgtt
- - - - - - - - - - - - cagataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagaga