Sequence
atgc intronic sequence ATGC exonic sequence...gggcgcagcagccgtgctgtcccgccgcggcagctgcggggaggcggcggtggtggtgcgcgccgtggttggtgagcgccgcgtgccgccggtgctggagCGCCCCGCCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAAGGTGAGGCGTCGCCGTCGAGTTCAGAGGCAATTTGGCGAAGGCGACGCC
Basic information
species | Oryza sativa |
transcript | LOC_Os02g33060.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7652254|gb|AU089823.1|AU089823EST: CAGCGGAGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACT---G-GAG CGCCCCGCCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAA
genomic: CAGCGGAGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACTGGAGCGAGgtcggggcgg ... ggtgctggagCGCCCCGCCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gggcgcagcagccgtgctgtcccgccgcggcagctgcggggaggcggcggtggtggtgcgcgccgtggttggtgagcgccgcgtgccgccggtgctggagCGCCCCGCCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAAGGTGAGGCGTCGCCGTCGAGTTCAGAGGCAATTTGGCGAAGGCGACGCC
- - -cagcagc
- - - - - - - tgctgtc
- - - - - - - - - - - - - - -gcagctg
- - - - - - - - - - - - - - - - - - - - - -gcggcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccgcc