1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaagaaattgttaaacaagatgaggtgttttcttgctcaacttgtagaaaacaaaaaggtcttttggatgctttcaaaaattgtgctattcttgttcagGAGGTTTCTTATTTGAAAAGTTCTTTGCAAAGATTTTCTGATGGTAAAAAGAACCTCAACATGATTCTTGATCAATCTAAG
species | Oryza sativa |
transcript | LOC_Os02g29280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tagaaaacaaaaaggtcttttggatgctttcaaaaattgtgctattcttgttcagGAGGTTTCTTATTTGAAAAGTTCTTTGCAAAGATTTTCTGATGGTAAAAAGAACCTCAACATGATTCTTGATCAATCTAAG
ttcttgttc CT-rich tract
tttcaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagaaattgttaaacaagatgaggtgttttcttgctcaacttgtagaaaacaaaaaggtcttttggatgctttcaaaaattgtgctattcttgttcagGAGGTTTCTTATTTGAAAAGTTCTTTGCAAAGATTTTCTGATGGTAAAAAGAACCTCAACATGATTCTTGATCAATCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-gaagaaa
- - - - - - - aacaaga
- - - - - - - - - - - - - - - ttcttgc
- - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgtgc