1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTATCCAACGACATCGACCTCCTCAACCCTCCCGCGGAGCTCGAGAAGCTCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtgaatccccgcacgcgcacgcatctcgtacctgtgtttcctttcgtagctgctgttcctcttttctgtgagagactacagctaagtgttttttttctttgttttcgcttggtcctgacgttgttcttggtttgatctgtctcgtgtgttgcag
species | Oryza sativa |
transcript | LOC_Os02g27769.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88239061|gb|CI240223.1|CI240223
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|86419763|gb|CI054564.1|CI054564
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|89169784|gb|CI110143.1|CI110143
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|86418988|gb|CI053789.1|CI053789
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88283575|gb|CI405021.1|CI405021
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88237988|gb|CI237837.1|CI237837
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88979768|gb|CI026075.1|CI026075
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88214926|gb|CI212964.1|CI212964
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88988287|gb|CI037605.1|CI037605
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|33654259|gb|CF276873.1|CF276873
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: AGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88238780|gb|CI238629.1|CI238629
genomic: AGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|86256782|gb|CI061545.1|CI061545
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88963548|gb|CI029344.1|CI029344
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88992044|gb|CI035182.1|CI035182
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCGACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|86251449|gb|CI055582.1|CI055582
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88996308|gb|CI037599.1|CI037599
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|86420719|gb|CI056708.1|CI056708
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCGACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|88241823|gb|CI241672.1|CI241672
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACATEST: gi|12622591|gb|AU172804.1|AU172804
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
EST: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATG GATGTCAAGTGCCAGGGATGCTTCAACAT
genomic: TCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtg ... tgtgttgcagGATGTCAAGTGCCAGGGATGCTTCAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATCCAACGACATCGACCTCCTCAACCCTCCCGCGGAGCTCGAGAAGCTCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAACTCATTCTTCATGgtatgacgtgaatccccgcacgcgcacgcatctcgtacctgtgtttcctttcgtagctgctgttcctcttttctgtgagagactacagctaagtgttttttttctttgttttcgcttggtcctgacgttgttcttggtttgatctgtctcgtgtgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC