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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactgcttcttcttagcatgagaccacaccaccttatcatgctcccccccattcagaactacccattggattttagagagaagctcagttaactgagctctcccttcttaattaagGTTCCTTCTGAAACTCAGCTCCCAAGCCCCTTCCTGATAGATATCTCTGACACTGGCATTTTGTTGAGAGTTCACAGCATACAAGTCAGGGAACAGTATC

Basic information

species Oryza sativa
transcript LOC_Os02g27260.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccattggattttagagagaagctcagttaactgagctctcccttcttaattaagGTTCCTTCTGAAACTCAGCTCCCAAGCCCCTTCCTGATAGATATCTCTGACACTGGCATTTTGTTGAGAGTTCACAGCATACAAGTCAGGGAACAGTATC
                                            tcttaat  putative branch site (score: 3)
                                    ctctcccttcttaatt  CT-rich tract
                                           ttcttaattaa  TA-rich tract