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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaataacgaaatcatgaccaggagataagtttttttcaccaatgatattctttatggagtagtaaaacgggtgctaactggctgaaaaaataatcatatttgggcctttttcccttcacattttttaacatttccacgaaatgctggcggcattcacaaacttcgattctgtattctagATGTGTTTCTGAAGTTTAGAGATGAAGATGGAATTTTTGAGGCAGAAGACGCAAGGGACCTGCTAAGTCTTTACAATGCCGCTCATCTCACGACACATGG

Basic information

species Oryza sativa
transcript LOC_Os02g26014.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27547847|gb|CA766020.2|CA766020
EST:     AGCTCTGTGGTTTTATCTTCTCCGTAAACATCGACACAGAGTTTCTCCAG                         ATGTGTTTCTGAAGTTTAGAGATGAAGATGGAATTTTTGAGGCAGAAGACG
genomic: AGCTCTGTGGTTTTATCTTCTCCTTAAACATCGACACAGAGTTTCTCCAGgtaattaata ... tgtattctagATGTGTTTCTGAAGTTTAGAGATGAAGATGGAATTTTTGAGGCAGAAGACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacatttccacgaaatgctggcggcattcacaaacttcgattctgtattctagATGTGTTTCTGAAGTTTAGAGATGAAGATGGAATTTTTGAGGCAGAAGACGCAAGGGACCTGCTAAGTCTTTACAATGCCGCTCATCTCACGACACATGG
 ttttaac  putative branch site (score: 2)
                                               tattcta  TA-rich tract