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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcatcatcaatctctcaatcaattctctccaaaaaaatcgaaacaagaattaatctcttctttcttacgatgaattgatgatcgtcttgtcgtcgcagAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAG

Basic information

species Oryza sativa
transcript LOC_Os02g07770.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07770.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G052544_T01 (Zea mays), 3'ss of exon 1
gtacgcatcatca-atctctcaatcaattctctccaaaaaaatcgaaacaagaattaatctcttctttcttacgatgaattgatgatcgtcttgtcgtcgcagAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAG
|||||  |  |   | ||   |   |  |  || |    |  ||          |    ||| ||||  ||  |||   ||  |     | |      |||||||||||| |||||||| ||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| |||
gtacgtgtagtagtagctactagctagctagctgctgctagctccctggcccggtcg--ctcgtcttggttctgatcgtttcctccctttttctctcacgcagAGGCGACTCCCAAGACCATCATGAGGGTCATGGGAGTCAAGGGGCTTACCCTCTACCACCTCAAGAGCCATCTTCAG

upper sequence: LOC_Os02g07770.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA15G29620.1 (Glycine max), 3'ss of exon 1
gtacgcatcatcaatctctcaatcaattctctccaaaaaaatcgaaacaagaattaatctcttctt--tcttacgatgaattgatgatc---gtcttgtcgtc-gcagAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAG
         || ||      || |||        ||   | |  |  || |  || || | || ||  ||||    | | |   |  |    ||  | |  |  |||||||| || || || || ||||||||||| |||||||||||||| |||||||| |||||||| |||||||| || |||
--------aataaaatagaaaagcaaaaggtgttaatttagtgtattcatgtgttcatgtattattattcttttagtaactctttcctttgtgttctatgatttgcagAGGCCACTCCTAAAACAATCATGAGGGTTATGGGAGTGAAGGGTCTCACCCTTTACCACCTTAAGAGCCACCTTCAG

upper sequence: LOC_Os02g07770.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA08G17400.1 (Glycine max), 3'ss of exon 1
gtacgcatcatcaatctctcaatcaattctctccaaaaaaatcgaaacaaga-attaatctcttctttcttacgatgaattgatgatcgtctt-gtcgtcgcagAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAG
    |       |  |    ||| | |    |  | | |  || |     ||   || | |  |||||      || |  |  |  || | || |   | |||||||| || || || || ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| ||||||
----gttcttgtagaccaaaaattattgtattagacatatgtctatgttggatgatattatgatcttttgattaatcatctttttctcttttttggatttgcagAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTCCAG

upper sequence: LOC_Os02g07770.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA15G41740.1 (Glycine max), 3'ss of exon 1
gtacgcatcatcaatctctcaatcaattctctccaaaaaaatcgaaacaagaattaatctcttctttcttacgatgaattgatgatcgtcttgtcgtcgcagAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAG
 |    | ||  ||| |   | |  ||  | |        ||   |  | |   | |    |  |||  |        ||  |     | |||   | |||||||| || || || || ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| || |||
-tgtagaccaaaaatgtagtagtacatgtt-tatgtttggattatattatggtctcaatgatcttttgattaatcatctttttctcttttttggatttgcagAGGCCACTCCTAAAACCATCATGAGGGTTATGGGGGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAG

upper sequence: LOC_Os02g07770.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S201_75V6.1 (Physcomitrella patens), 3'ss of exon 1
-----gtacgcatcatcaatctctcaatcaattctctccaaaaaaatcgaaacaa--gaattaatctcttctttcttacgatgaattgatgatcgtcttgtcgtcgcagAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAG
      |  ||      |   ||  | |  |     || |||  | ||| |   |   | |  | ||||    | |  |  ||   |||  |||  ||        ||||||| || || ||| |  | |||||||| |||||||||||||| || || ||||||||  | |||||||||||||||
tgggcttctgctgagagatgatcggagtgtaggtgatctaaacgattcgtagtgacgaagtccaactctctcgtttgtctgtgg--tga-aatcaactga------cagAGGCTACACCGAAGTCTGTGATGAGGGTTATGGGAGTGAAGGGTCTTACGCTCTACCATTTGAAGAGCCATCTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagaattaatctcttctttcttacgatgaattgatgatcgtcttgtcgtcgcagAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAG
                                         tcttgtc  CT-rich tract
     attaatct  TA-rich tract