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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctgatatttgagagctgttttacaagcttaagcttcagtttgtgttgccttttatgttaatgtgaatactgtgtggtagctgatgatttgtgttgcttgttaaggttgaaacaatgagtgagttaataaatgttttgtgctgtgcagATAATGAGCGATTGAGAAGGCTGTATACTGAAACTTTGTTCAAGTTCACCAATCAG

Basic information

species Oryza sativa
transcript LOC_Os02g05520.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g05520.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G067350_T02 (Zea mays), 3'ss of exon 2
gttagctgatatttgagagctgttt-tacaagcttaagcttcagtttgtgttgccttttatgttaatgtgaatactgtgtggtagctgatgatttgtgttgcttgttaaggttgaaacaatgagtgagttaataaatgttttgtgctgtgcagATAATGAGCGATTGAGAAGGCTGTATACTGAAACTTTGTTCAAGTTCACCAATCAG
|||||| | |       ||| || | |||||| |||| || || | |      ||| |  |   | | || | | | || ||||||| || ||||   || | |  | || | |||| ||          | ||| ||||   |||| ||||||||||||||| || |||||||  || || |||||||| |||||| ||||||| |||
gttagccgcttc-----agccgtctctacaagtttaaact-caatct------cctgtcttaagagtctgtaaattttgcggtagcttatcatttacctttccttctgagatcgaaagaa-------acgagtaactgttc-atgctctgcagATAATGAGCGGTTAAGAAGGCAATACACAGAAACTTTATTCAAGGTCACCAACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttgttaaggttgaaacaatgagtgagttaataaatgttttgtgctgtgcagATAATGAGCGATTGAGAAGGCTGTATACTGAAACTTTGTTCAAGTTCACCAATCAG
                            agttaat  putative branch site (score: 4)
                            agttaataaatgtttt  TA-rich tract