1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atattccaaatctatcagtgacattattttcttggcatcctttaattgtcagttgatatgcatccatagccttgctgactgctatgtttgcctcatgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCGAGCACGAGTACTTCAAGGACCTGGAAGTGGCGTAGATTATGCCTCATC
species | Oryza sativa |
transcript | LOC_Os02g03060.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCT AAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCEST: gi|2317624|gb|C22678.1|C22678
genomic: TTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCTgtaagtgacc ... cctcatgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTC
EST: CGATCTTCTCTCT AAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCCTEST: gi|33676923|gb|CF305162.1|CF305162
genomic: CGATCTTCTCTCTgtaagtgacc ... cctcatgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTG-CCCT
EST: TTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCT AAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCEST: gi|89173905|gb|CI041798.1|CI041798
genomic: TTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCTgtaagtgacc ... cctcatgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTC
EST: TTCAGGACTCGATCTTCTCTCT AAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCEST: gi|86823702|gb|CI258755.1|CI258755
genomic: TTCAGGACTCGATCTTCTCTCTgtaagtgacc ... cctcatgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTC
EST: TTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCT AAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCEST: gi|88832780|gb|CI369670.1|CI369670
genomic: TTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCTgtaagtgacc ... cctcatgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTC
EST: TTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCT AAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTC
genomic: TTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCTgtaagtgacc ... cctcatgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTC
ttgtcagttgatatgcatccatagccttgctgactgctatgtttgcctcatgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCGAGCACGAGTACTTCAAGGACCTGGAAGTGGCGTAGATTATGCCTCATC
tgctgac putative branch site (score: 15)
tttgcctc putative PPT
ttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattccaaatctatcagtgacattattttcttggcatcctttaattgtcagttgatatgcatccatagccttgctgactgctatgtttgcctcatgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCGAGCACGAGTACTTCAAGGACCTGGAAGTGGCGTAGATTATGCCTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - -ggcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatg