1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAAGGTGGAAGAGATGCCATAACTAAGAATCCCATTTTGCGTGAAGACCAGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcccttgctattgttagatttactgaaaagcctccttttataaggatgcctgcttttcggcacttaaattcaacatctccaaaacgttctttt...
species | Oryza sativa |
transcript | LOC_Os02g02360.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|88840688|gb|CI080142.1|CI080142
genomic: CTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|88465580|gb|CI522331.1|CI522331
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|22306912|gb|BQ908134.1|BQ908134
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: CTTCCCCAGTAAGGTTCTGCGACCCTAAATCGAAGAAGTCAAACAAGCAG GACGANGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGTCGGTGTAAAEST: gi|88267098|gb|CI379033.1|CI379033
genomic: CTTCCCCAG-AAGGTTCTGC-ACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAG-CGGTG-AAA
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|27547486|gb|CA765683.2|CA765683
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|88970496|gb|CI383998.1|CI383998
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: GGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|88268524|gb|CI378459.1|CI378459
genomic: GGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|88835691|gb|CI370796.1|CI370796
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: AGCTTCCCCAGAAGGTTCTTCACCCTAAATCGAAGAAGTCAAACAAGCA- GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGTTGAAAAGEST: gi|88286558|gb|CI525057.1|CI525057
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: AGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGGACATATTTTCGCACAGCGGTGAAAAEST: gi|86600707|gb|CI356464.1|CI356464
genomic: AGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGA-GGACATATTTTCGCACAGCGGTGAAAA
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|88978436|gb|CI384818.1|CI384818
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: CTTCCCCAAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|33810129|gb|CF330954.1|CF330954
genomic: CTTCCCC-AGAAGGTTCTGCACCCTAAATCGAAGAAGTC-AAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTTGGGTGTCGAGGACATATTTTEST: gi|88463817|gb|CI527144.1|CI527144
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTT-GGGTGTCGAGGACATATTTT
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAEST: gi|86495183|gb|CI137816.1|CI137816
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCA-Ggtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAA
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGEST: gi|86484092|gb|CI126725.1|CI126725
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
EST: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAG GACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
genomic: AGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcc ... ttctctatagGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAGGTGGAAGAGATGCCATAACTAAGAATCCCATTTTGCGTGAAGACCAGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAGTCAAACAAGCAGgtaactagcccttgctattgttagatttactgaaaagcctccttttataaggatgcctgcttttcggcacttaaattcaacatctccaaaacgttctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT