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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGGCCTTCCGCGCGGCGAACGCGCTGCTGGTGCGCACCTACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCATCGTCTTCGGgtaaaactcgccgccgccgccgccgccgccgccgctggctgttgtgcgccggcttttagtctgcttgtaagtcgcttgaaatcgaaatagaatccagctgacactctcaaagggagtgggatacttgaactgccgcattttctgttcactgcag

Basic information

species Oryza sativa
transcript LOC_Os02g02110.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02110.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 3
CGCTGGCCTTCCGCGCGGCGAACGCGCTGCTGGTGCGCACCTACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCATCGTCTTCGGgtaaaactcgccgccgccgccgccgccgccgccgctggctgttgtgcgccggcttttagtctgcttgtaagtcgcttgaaatcgaaatagaatccagctgacactctcaaagggagtgggatacttgaactgccgcattttctgttcactgcag
||||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||  ||||||  ||||         || |  |||| ||| |   ||| || | |||||     ||      |  |   |||    |     ||| |||     ||| | |                                          
CGCTGGCGTTCCGCGCGGCCAACGCGTTGCTCGTGCGCACATACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCGTCGCGTTCGGgtaac-ctcgccctcgcc-------ttgctgttgctgcctgctt--cgctgg-tgttagttacggtgcgccctgaattggatccggttgctcacca-ctgcttggctcgagg------------------------------------------

upper sequence: LOC_Os02g02110.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G000937_T01 (Zea mays), 5'ss of exon 2
CGCTGGCCTTCCGCGCGGCGAACGCGCTGCTGGTGCGCACCTACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCATCGTCTTCGGgtaaaactcgccgccgccgccgccgccgccgccgctggctgttgtgcgccggcttttagtctgcttgtaagtcgcttgaaatcgaaatagaatccagctgac-actctcaaagggagtgggatacttgaactgccgcattttctgttcactgcag
||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||| |||||||||||||||||| ||| ||||||||||  ||||||  ||||         || |  |||| ||| |   ||| || | |||||     ||     |||    ||| | |   |  | | ||| || | || | |  |                                         
CGCTGGCGTTCCGCGCGGCCAACGCGCTGCTCGTGCGCACGTACTTCAACCCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGGgtaac-ctcgccctcgcc-------ttgctgttgctgcctgctt--cgctgg-tgttagt-----tgcggtgcgccccgaattggatccggttgctgctcactagtcaccactgct---------------------------------------

upper sequence: LOC_Os02g02110.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA17G07620.1 (Glycine max), 5'ss of exon 1
CGCTGGCCTTCCGCGCGGCGAACGCGCTGCTGGTGCGCACCTACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCATCGTCTTCGGgtaaaactcgccgccgccgccgccgccgccgccgctggctgttgtgcgccggcttttagtctgcttgtaagtcgcttgaaatcgaaatagaatccagctgacactctcaaagggagtgggatacttgaactgccgcattttctgttcactgcag
         || ||  ||| |   |  |  ||||||  || || |||||||||||||| ||||||||| ||| ||||||||| || ||||||| ||| |||||       |||   |   |    || |   |      |  ||| ||     |  |      ||  ||||     |||  | | |                                                                    
------TTCTCTGCTTGGC-ATTACATT-TTGGTGCAGACTTATTTCAACCCCGACGAACACTGGCAGGGCCCCGAGGTCGCTCATCGCATCGCCTTTGGgta-------ccgttccattcatttcccctttcatgttttcatgttcgtttcttcgtgaatgcctcataagc--tctgatctggcag-------------------------------------------------------------------

upper sequence: LOC_Os02g02110.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ22080 (Selaginella moellendorffii), 5'ss of exon 1
CGCTGGCCTTCCGCGCGGCGAACGCGCTGCTGGTGCGCACCTACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCATCGTCTTCGGgtaaaactcgccgccgccgccgccgccgccgccgctggctgttgtgcgccggcttttagtctgcttgtaagtcgcttgaaatcgaaatagaatccagctgacactctcaaagggagtgggatacttgaactgccgcattttctgttcactgcag
   | || || ||   |  ||| || ||||| || ||||| ||||||||||| ||||||||||||||    ||||| || || |||||||| ||||||||||||  |||     |    |   ||  | |     |   |||| | |   |   | |||                                                                                               
GTATTGCGTTTCGTTTGCTGAATGCCCTGCTCGTTCGCACGTACTTCAACCCGGACGAGCACTGGCAAGCACTCGAAGTTGCGCACCGCATTGTCTTCGGgtaag-ctcaaaaacaaatctctcg--gtcatacattcttgtt-ttctttgtgatctag-----------------------------------------------------------------------------------------------