1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gacctagtttctttctttaaaagaaaactgtgactcatgtttcaattccaactggcataagtttttatttctattgtgacctgacatgaacccgtttcagGAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCTTGCTAAAGGTCTTGAAGGACCTCTGCTTTCTAGTGGAGCAAGGCTCAGG
species | Oryza sativa |
transcript | LOC_Os01g74000.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCATGAGATTTGTATTGGTCAGCTACCTCCTACATCAATAGTTGAATACA GAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCTEST: gi|88250343|gb|CI348573.1|CI348573
genomic: GCATGAGATTTGTATTGGTCAGCTACCTCCTACATCAATAGTTGAATACAgtgagcacac ... cccgtttcagGAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCT
EST: GCATGAGATTTGTATTGGTCAGCTACCTCCTACATCAATAGTTGAATACA GAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCTEST: gi|25807006|gb|CA762967.1|CA762967
genomic: GCATGAGATTTGTATTGGTCAGCTACCTCCTACATCAATAGTTGAATACAgtgagcacac ... cccgtttcagGAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCT
EST: GCATGAGATTTGTATTGGTCAGCTACCTCCTACATCAATAGTTGAATACA GAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCTEST: gi|38478270|gb|CF962403.1|CF962403
genomic: GCATGAGATTTGTATTGGTCAGCTACCTCCTACATCAATAGTTGAATACAgtgagcacac ... cccgtttcagGAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCT
EST: GCATGAGATTTGTATTGGTCAGCTACCTCCTACATCAATAGTTGAATACA GAATCCACTGAATGCTGTTCTCT
genomic: GCATGAGATTTGTATTGGTCAGCTACCTCCTACATCAATAGTTGAATACAgtgagcacac ... cccgtttcagGAATCCACTGAATGCTGTTCTCT
ttccaactggcataagtttttatttctattgtgacctgacatgaacccgtttcagGAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCTTGCTAAAGGTCTTGAAGGACCTCTGCTTTCTAGTGGAGCAAGGCTCAGG
acctgac putative branch site (score: 6)
cccgtttc putative PPT
ataagtttttatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacctagtttctttctttaaaagaaaactgtgactcatgtttcaattccaactggcataagtttttatttctattgtgacctgacatgaacccgtttcagGAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCTTGCTAAAGGTCTTGAAGGACCTCTGCTTTCTAGTGGAGCAAGGCTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - aagaaaa
- - - - - - - - - - - - - -ctgtgac
- - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - tggcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatg