1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gacatagacatactttggtttgcagcgtatctacaagtatgcaaatatgtgccctggagcacaaccctgaggaatatagaactaatatgaattatcgcagATCACCGATTTGAAAATCGCCGCTGATGGAAGGGATGCTGCCATCTGATCCTCCGGGCAGTGATGATGATGGAAATGGAACGAACATGTGGACAGGACAG
species | Oryza sativa |
transcript | LOC_Os01g73080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGCGAGCAGGGGCGCTGTTGTTCGTCCTGCTGCTTCCGCCGCATCCTGGTGAGCACATCCTCGGCCGCCGCCGCCGCCTGCGCCGATCCCCATCCATCCCGCGAGCGAGCAGGGACGCCGTCGTEST: gi|88335915|gb|CI645516.1|CI645516
genomic: CGAGCGAGCAGGGGCGCTGTTGTTCGTCCTGCTGCTTCCGCCGCATCCTGGTGAGCACATCCTCGGCCGCCGCCGCCGCCTGCGCCGATCCCCATCCATCCCGCGAGCGAGCAGGGACGCCGTCGT
EST: CGAGCGAGCAGGGGCGCTGTTGTTCGTCCTGCTGCTTCCGCCGCATCCTGGTGAGCACATCCTCGGCCGCCGCCGCCGCCTGCGCCGATCCCCATCCATCCCGCGAGCGAGCAGGGACGCCGTCGTEST: gi|86831786|gb|CI303226.1|CI303226
genomic: CGAGCGAGCAGGGGCGCTGTTGTTCGTCCTGCTGCTTCCGCCGCATCCTGGTGAGCACATCCTCGGCCGCCGCCGCCGCCTGCGCCGATCCCCATCCATCCCGCGAGCGAGCAGGGACGCCGTCGT
EST: CGAGCGAGCAGGGGCGCTGTTGTTCGTCCTGCTGCTTCCGCCGCATCCTGGTGAGCACATCCTCGGCCGCCGCCGCCGCCTGCGCCGATCCCCATCCATCCCGCGAGCGAGCAGGGACGCCGTCGTEST: gi|38477333|gb|CF961466.1|CF961466
genomic: CGAGCGAGCAGGGGCGCTGTTGTTCGTCCTGCTGCTTCCGCCGCATCCTGGTGAGCACATCCTCGGCCGCCGCCGCCGCCTGCGCCGATCCCCATCCATCCCGCGAGCGAGCAGGGACGCCGTCGT
EST: CGAGCGAGCAGGGGCGCTGTTGTTCGTCCTGCTG-TTCCGCCGCATCCTG-TGAGCACATCCTCGGCCGCCGCCGCCGCCTGCGCCGATCCCCATCC--CCCGCGAGCGAGCAGGG-CGCCGTCGT
genomic: CGAGCGAGCAGGGGCGCTGTTGTTCGTCCTGCTGCTTCCGCCGCATCCTGGTGAGCACATCCTCGGCCGCCGCCGCCGCCTGCGCCGATCCCCATCCATCCCGCGAGCGAGCAGGGACGCCGTCGT
tatgtgccctggagcacaaccctgaggaatatagaactaatatgaattatcgcagATCACCGATTTGAAAATCGCCGCTGATGGAAGGGATGCTGCCATCTGATCCTCCGGGCAGTGATGATGATGGAAATGGAACGAACATGTGGACAGGACAG
aactaat putative branch site (score: 2)
aatatagaactaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacatagacatactttggtttgcagcgtatctacaagtatgcaaatatgtgccctggagcacaaccctgaggaatatagaactaatatgaattatcgcagATCACCGATTTGAAAATCGCCGCTGATGGAAGGGATGCTGCCATCTGATCCTCCGGGCAGTGATGATGATGGAAATGGAACGAACATGTGGACAGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - -ttgcagc
- - - - - - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - -ccctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaactaa