1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattacagtatctctaagtccatcacacatgcagcattgccaaaatgcagaatgtaccatcatttgaccacttaatcttaacactatttttacagTCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTTGCGTTCAAGCTAGCTCAGCAATCGGGTGGGAGATCGGTCCTTGGCCTGCC
species | Oryza sativa |
transcript | LOC_Os01g72950.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGTATCCCAACTCCACCGGCATGGCTGCCAACTTACATGCTCATCAAG TCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTTGEST: gi|88540852|gb|CI468926.1|CI468926
genomic: TTGGAATCCCAACTCCACCGGCATGGCTGCCAACTTACATGCTCATCAAGgtaattacag ... atttttacagTCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTTG
EST: TTGGAATCCCGACTCCACCGGCATGGCTGCCAACTTACATGCTCATCAAG TCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGGATCGAAGGTTEST: gi|14981716|gb|BI306394.1|BI306394
genomic: TTGGAATCCCAACTCCACCGGCATGGCTGCCAACTTACATGCTCATCAAGgtaattacag ... atttttacagTCGGATAAACTCGACTACGAGAGAATATGATATGCACA-GGATCGAAGGTT
EST: TTGGAATCCCAACTCCACCGGCATGGCTGCCAACTTACATGCTCATCAAG TCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTTGEST: gi|14981699|gb|BI306377.1|BI306377
genomic: TTGGAATCCCAACTCCACCGGCATGGCTGCCAACTTACATGCTCATCAAGgtaattacag ... atttttacagTCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTTG
EST: TTGGAATCCCAACTCCACCGGCATGGCTGCCAACTTACATGCTCATCAAG TCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTTG
genomic: TTGGAATCCCAACTCCACCGGCATGGCTGCCAACTTACATGCTCATCAAGgtaattacag ... atttttacagTCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTTG
caaaatgcagaatgtaccatcatttgaccacttaatcttaacactatttttacagTCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTTGCGTTCAAGCTAGCTCAGCAATCGGGTGGGAGATCGGTCCTTGGCCTGCC
tcttaac putative branch site (score: 25)
ctattttt CT-rich tract
ttaatcttaacactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattacagtatctctaagtccatcacacatgcagcattgccaaaatgcagaatgtaccatcatttgaccacttaatcttaacactatttttacagTCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTTGCGTTCAAGCTAGCTCAGCAATCGGGTGGGAGATCGGTCCTTGGCCTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC