1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgccgtgtctgaaaaagagcttgaactttattatcggcatattgcactttatggaaacccacaatcccagaatgttgatcctgtttattgtgatgatagAAGAGCTGCTTCTCTGAAAATGGAAGAACCGAGTCAAGGGAAGGACCTATCGCATATGGATAACGATGGTTTCTCTGATATCACTGATGCTTCGGAGTCT
species | Oryza sativa |
transcript | LOC_Os01g72820.6 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCAGCCAGATGTCATGTCACCAGTCGATACACTATCAAAGAAAAAG AAGAGCTGCTTCTCTGAAAATGGAAGAACCGAGTCAAGGGAAGGACCTATC
genomic: ATGTTCAGCCAGATGTCATGTCACCAGTCGATACACTATCAAAGAAAAAGgtaggtttgt ... gtgatgatagAAGAGCTGCTTCTCTGAAAATGGAAGAACCGAGTCAAGGGAAGGACCTATC
cactttatggaaacccacaatcccagaatgttgatcctgtttattgtgatgatagAAGAGCTGCTTCTCTGAAAATGGAAGAACCGAGTCAAGGGAAGGACCTATCGCATATGGATAACGATGGTTTCTCTGATATCACTGATGCTTCGGAGTCT
tgttgat putative branch site (score: 4)
tgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgccgtgtctgaaaaagagcttgaactttattatcggcatattgcactttatggaaacccacaatcccagaatgttgatcctgtttattgtgatgatagAAGAGCTGCTTCTCTGAAAATGGAAGAACCGAGTCAAGGGAAGGACCTATCGCATATGGATAACGATGGTTTCTCTGATATCACTGATGCTTCGGAGTCT
- - -gtgtctg
- - - - - - aaaaaga
- - - - - - - - - -gcttgaa
- - - - - - - - - - - - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttga