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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgccgtgtctgaaaaagagcttgaactttattatcggcatattgcactttatggaaacccacaatcccagaatgttgatcctgtttattgtgatgatagAAGAGCTGCTTCTCTGAAAATGGAAGAACCGAGTCAAGGGAAGGACCTATCGCATATGGATAACGATGGTTTCTCTGATATCACTGATGCTTCGGAGTCT

Basic information

species Oryza sativa
transcript LOC_Os01g72820.5
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29676355|gb|CB672630.1|CB672630
EST:     GCCAGATGTCATGTCACCAGTGGATACACTATCAAAGAAAAAG                         AAGAGCTGCTTCTCTGAAAATGGAAGAACCGAGTCAAGGGAAGGACCTATC
genomic: GCCAGATGTCATGTCACCAGTCGATACACTATCAAAGAAAAAGgtaggtttgt ... gtgatgatagAAGAGCTGCTTCTCTGAAAATGGAAGAACCGAGTCAAGGGAAGGACCTATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttatggaaacccacaatcccagaatgttgatcctgtttattgtgatgatagAAGAGCTGCTTCTCTGAAAATGGAAGAACCGAGTCAAGGGAAGGACCTATCGCATATGGATAACGATGGTTTCTCTGATATCACTGATGCTTCGGAGTCT
                            tgttgat  putative branch site (score: 4)
                                     tgtttatt  TA-rich tract