1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAGTCTGACGAAGAAGCTAATCCTAGTGAATATGATGATAATGATGATGAGACTGGAGATAATATAGGCACTGTTCTTTATGATCATGGAGGCTTCAAGgtaacagggtgataccttgtgtggcatcaactcatttgctgactacgaattgtattttgcatctgtctagacccctattctatacatttggatttcttga...
species | Oryza sativa |
transcript | LOC_Os01g72820.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGACTGGAGATAATATAGGCACTGTTCTTTATGATCATGGAGGCTTCAAG GTCCTTCCAGATTGGCCCACCCCCATGGTCAAAAAGCAAAGTTTGGTGCCTEST: gi|86519565|gb|CI159771.1|CI159771
genomic: AGACTGGAGATAATATAGGCACTGTTCTTTATGATCATGGAGGCTTCAAGgtaacagggt ... tattctgcagGTCCTTACAGACTGGCCCACCCCCATGGTCAAAAAGCAAAGTTTGGTGCCT
EST: AGACTGGAGATAATATAGGCACTGTTCTTTATGATCATGGAGGCTTCAAG GTCCTTACAGACTGGCCCACCCCCATGGTCAAAAAGCAAAGTTTGGTGCCTEST: gi|88254458|gb|CI353282.1|CI353282
genomic: AGACTGGAGATAATATAGGCACTGTTCTTTATGATCATGGAGGCTTCAAGgtaacagggt ... tattctgcagGTCCTTACAGACTGGCCCACCCCCATGGTCAAAAAGCAAAGTTTGGTGCCT
EST: AGACTGGAGATAATATAGGCACTGTTCTTTATGATCATGGAGGCTTCAAG GTCCTTACAGATTGGCCCACCCCCATGGTCAAAAAGCAAAAGTTTGGTGCC
genomic: AGACTGGAGATAATATAGGCACTGTTCTTTATGATCATGGAGGCTTCAAGgtaacagggt ... tattctgcagGTCCTTACAGACTGGCCCACCCCCATGGTCAAAAAGC-AAAGTTTGGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTCTGACGAAGAAGCTAATCCTAGTGAATATGATGATAATGATGATGAGACTGGAGATAATATAGGCACTGTTCTTTATGATCATGGAGGCTTCAAGgtaacagggtgataccttgtgtggcatcaactcatttgctgactacgaattgtattttgcatctgtctagacccctattctatacatttggatttcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG