Sequence
atgc intronic sequence ATGC exonic sequence...ccccccggattttttaggtgaaattagtccagttggaagggacaaggatgcgtcatcagtcattcaaatgctaattggttgcgaagatgaagatctgcagTTTGTCTCAATAGTGGGGATGGGTGGGATTGGGAAGACCACGCTAGCTCAGATGGTCTACGACGACGATATAGTTCAGCAGCACTTCCCTGTGCGTTTGT
Basic information
species | Oryza sativa |
transcript | LOC_Os01g72390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggatgcgtcatcagtcattcaaatgctaattggttgcgaagatgaagatctgcagTTTGTCTCAATAGTGGGGATGGGTGGGATTGGGAAGACCACGCTAGCTCAGATGGTCTACGACGACGATATAGTTCAGCAGCACTTCCCTGTGCGTTTGT
tgctaat putative branch site (score: 2)
attcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccccccggattttttaggtgaaattagtccagttggaagggacaaggatgcgtcatcagtcattcaaatgctaattggttgcgaagatgaagatctgcagTTTGTCTCAATAGTGGGGATGGGTGGGATTGGGAAGACCACGCTAGCTCAGATGGTCTACGACGACGATATAGTTCAGCAGCACTTCCCTGTGCGTTTGT
- - - - - - - - - - - - - - - - - - - - - - aggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc