Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|55433965|gb|CV730099.1|CV730099EST: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAG TGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTGAGGAGCAGAAG
genomic: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAGgcaaatctct ... acacctgcagTGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTGAGGAGCAGAAG
EST:
gi|88762073|gb|CI771629.1|CI771629EST: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAG TGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTGAGGAGCAGA
genomic: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAGgcaaatctct ... acacctgcagTGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTGAGGAGCAGA
EST:
gi|88732444|gb|CI755621.1|CI755621EST: CCTATGAACGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAG TGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTGAGGAGCAGAAG
genomic: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAGgcaaatctct ... acacctgcagTGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTGAGGAGCAGAAG
EST:
gi|88740513|gb|CI764021.1|CI764021EST: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAG TGCACGTTGCCGTTGTTGCTGGCCCTG
genomic: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAGgcaaatctct ... acacctgcagTGCACGTTGCCGTTGTTGCTGGCCCTG
EST:
gi|88736177|gb|CI759685.1|CI759685EST: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAG TGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTG
genomic: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAGgcaaatctct ... acacctgcagTGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTG
EST:
gi|112786711|gb|EE591298.1|EE591298EST: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAG TGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTGAGGAGCAGAAG
genomic: CCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAGgcaaatctct ... acacctgcagTGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTGAGGAGCAGAAG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
28 (upstream exon),
48 (downstream exon)
Score:
1CGAGTACGTCGACGACGCATTCGACGGCCCGCCCATCCTACCTGCCGACCCCTATGACCGCGCCACGGCTCGTTTCTGGGCTCAATTCATCGATCACAAGgcaaatctct ... acacctgcagTGCACGTTGCCGTTGTTGCTGGCCCTGTGGCTGGACGGTGAGGAGCAGAAGGGGTTTCTGAAGGAGACGAAGGAGAACCTGTCGCTACTGGAGGCACAGC
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