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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTCACGTGCAACGACGAGAACTTCGTCACCAAGGCCGGCGCGCAGCGCGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgagacctgatccccctcccgtcgcgtacaatttctagggtttatgcgttccggagtggaattcaggagacttgtttggggggaattttgattgt...

Basic information

species Oryza sativa
transcript LOC_Os01g71300.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g71300.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G155334_T01 (Zea mays), 5'ss of exon 2
----------GGCCTCACGTGCAACGACGAGAACTTCGTCACCAAGGCCGGCGCGCAGCGCGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgta-tgtgagacctgatccccctcccgtcgcgtacaatttctagggtttatgcgttccggagtggaattcaggagact---tgtttggggggaattttgattgt
          |||||||| || | ||||||||| ||| |||  ||||          |||||||||||||||| ||||||||||||| ||| | || |||||||||||||||| |||   |  ||| ||||||| | || | |   | |   || ||| |||  ||  |  || |  || |   | ||    ||  ||| | ||     |  | 
CTGGCTCTCGGGCCTCACCTGTACCGACGAGAATTTCATCATGAAGG----------GCGCGCCGCCGCCGCCAACGGCATCGCCCTTGTCACGCCTGACACCTCCCCACgtaatgtcgaaattgaaccccctctcctc-cctttgactgacagcgtt-atgt-tttagttgtagggtttacatgcctgcccgtaggggtgaaaacgaaaacg-

upper sequence: LOC_Os01g71300.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G046558_T01 (Zea mays), 5'ss of exon 2
GGCCTCACGTGCAACGACGAGAACTTCGTCACCAAGGCCGGCGCGCAGCGCGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgagacctgatcc-------ccctcccgtcgcgtacaatttctagggtttatgcgttccggagtggaattcaggagacttgtttggggggaattttgattgt
|| ||||| |||| ||||||||| ||| |||  ||| ||||||| |||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||   |  ||| ||       |||||     |   |   |||||||||||||||| | ||    ||   | | | |||  |  ||  |     || |      
GGTCTCACCTGCACCGACGAGAATTTCATCATAAAGTCCGGCGCCCAGCGCGCCGCCGCTGCCCACGGCATCGCCCTCGTGGCACCTGACACCTCCCCACgtatgtcgaaattgagccaactcctccctctgactgtacagggtttctagggtttatgcctgcccatctgtg-tccggaaga--tacttacgattccttctct----

upper sequence: LOC_Os01g71300.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G108369_T01 (Zea mays), 5'ss of exon 2
GGCCTCACGTGCAACGACGAGAACTTCGTCACCAAGGCCGGCGCGCAGCGCGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgagacctgatccccctcccgtcgc-----gtacaa--tttctagggtttatgcgttccggagtggaattcaggagacttgtttggggggaattttgattgt
|| ||||| |||| ||||||||| ||| |||  ||| || |||| |||||||||||||| ||||||| |||||||||||| || || |||||||||||||||||||   |  ||| || |||||   | |     |||||   |||||||||||||||| | |     ||   | | | |||  |  ||  |     || |      
GGTCTCACCTGCACCGACGAGAATTTCATCATAAAGTCCAGCGCCCAGCGCGCCGCCGCTGCCCACGACATCGCCCTCGTGGCACCTGACACCTCCCCACgtatgtcgaaattgagccacctcctccctctgactgtacagggtttctagggtttatgcctgctcatctgtg-tccggaaga--tacttacgattccttctct----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88667209|gb|CI715367.1|CI715367
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|89171382|gb|CI720441.1|CI720441
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88973956|gb|CI718364.1|CI718364
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88672977|gb|CI727092.1|CI727092
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88675003|gb|CI729116.1|CI729116
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88594517|gb|CI714475.1|CI714475
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88674163|gb|CI728276.1|CI728276
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88676307|gb|CI730420.1|CI730420
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88905121|gb|CI712420.1|CI712420
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|89172489|gb|CI721548.1|CI721548
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|89172386|gb|CI721445.1|CI721445
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88669850|gb|CI723966.1|CI723966
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88594817|gb|CI714775.1|CI714775
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88676329|gb|CI730442.1|CI730442
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88674672|gb|CI728785.1|CI728785
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88667436|gb|CI722175.1|CI722175
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88595192|gb|CI715348.1|CI715348
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88673403|gb|CI727516.1|CI727516
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88594033|gb|CI713987.1|CI713987
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAN                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88673631|gb|CI727744.1|CI727744
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88593847|gb|CI713801.1|CI713801
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88670559|gb|CI724675.1|CI724675
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88954490|gb|CI718469.1|CI718469
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88675254|gb|CI727369.1|CI727369
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88672556|gb|CI726672.1|CI726672
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88675704|gb|CI729817.1|CI729817
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|88675991|gb|CI730104.1|CI730104
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|33793279|gb|CF322520.1|CF322520
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
EST: gi|29670940|gb|CB667215.1|CB667215
EST:     CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCAC                         GTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG
genomic: CGCCGCCGCCGCCCACGGCATCGCCCTCGTCGCCCCCGACACCTCCCCACgtatgtgaga ... cttcatgcagGTGGGCTTAATATAGAGGGAGAGGCAGACAGTTGGGATTTTGGTGTTG