1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctcttggaacctccctgtagaattgtcctctatttctactgttaattgtctaatttcttcatactggaattgtgctag
species | Oryza sativa |
transcript | LOC_Os01g70960.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|86502387|gb|CI145020.1|CI145020
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|86486845|gb|CI129478.1|CI129478
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|218495259|gb|FG944818.1|FG944818
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|3766676|gb|AU030786.1|AU030786
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|89168991|gb|CI020531.1|CI020531
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTTTGCAAGCTGCAEST: gi|89164688|gb|CI101776.1|CI101776
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|87021720|gb|CI276119.1|CI276119
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|55432382|gb|CV729212.1|CV729212
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|29669776|gb|CB666051.1|CB666051
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|38481751|gb|CF965826.1|CF965826
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|313090494|gb|HO213490.1|HO213490
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|88222829|gb|CI220894.1|CI220894
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|86433950|gb|CI094293.1|CI094293
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|86508914|gb|CI151547.1|CI151547
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|88993878|gb|CI114168.1|CI114168
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: GGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|11564727|gb|AU165363.1|AU165363
genomic: GGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGNGTGAAATGGATTTTTCTACTCTCCCTNGCACTTCTGCAAGCTGCAEST: gi|87029581|gb|CI257376.1|CI257376
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|117235872|gb|CT847828.1|CT847828
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|86418967|gb|CI053768.1|CI053768
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCAEST: gi|29669905|gb|CB666180.1|CB666180
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
EST: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
genomic: TCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctct ... attgtgctagATGGGAGTGAAATGGATTTTTCTACTCTCCCTCGCACTTCTGCAAGCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTGgtaaccctcttggaacctccctgtagaattgtcctctatttctactgttaattgtctaatttcttcatactggaattgtgctag
- - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA