1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctggagtgatgatagctgtatgagatcttcaaatcacttctgcgaatttaagaagtaggaaggtgtgattgcagcttatagcttttgtttctttttcagGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGT
species | Oryza sativa |
transcript | LOC_Os01g70100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aatttaagaagtaggaaggtgtgattgcagcttatagcttttgtttctttttcagGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGT
cttttgtttctttttc CT-rich tract
ttttgtttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctggagtgatgatagctgtatgagatcttcaaatcacttctgcgaatttaagaagtaggaaggtgtgattgcagcttatagcttttgtttctttttcagGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGT
gctggag
- - - -tgatgat
- - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - aagaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcagc