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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctcatttctattaatgaaatgactataagttagagcctactctaccttcttccgtcaaaaatatgttacatggatacctgccactattttctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTCTACGCATTATTCCGATTGATTTCTTGTTCCATATACATTCCGATATGGG

Basic information

species Oryza sativa
transcript LOC_Os01g69050.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88430885|gb|CI571875.1|CI571875
EST:     CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG                         AATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
EST: gi|13895924|gb|AU182260.1|AU182260
EST:     CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG                         AATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
EST: gi|29673508|gb|CB669783.1|CB669783
EST:     CTGCCGCGGATGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG                         AATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
EST: gi|58587855|gb|CF986163.1|CF986163
EST:     CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG                         AATTTGTGTCAATCTGAATGGAACAGTCTTAGGCTCTGAAAAACATATTTC
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
EST: gi|88367817|gb|CI570556.1|CI570556
EST:     CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG                         AATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcttccgtcaaaaatatgttacatggatacctgccactattttctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTCTACGCATTATTCCGATTGATTTCTTGTTCCATATACATTCCGATATGGG
                                       ctattttct  CT-rich tract
            aaaaatatgttacat  TA-rich tract