1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCCGCCTCGCCTTTTGGATTGCGAACTCGATTTCCAATCAAATGATCATCTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgccgccttcttgatcttctctgtttttttttcctttcatgccttatttttcatctgaatttttgagagtcttggggtatttgttccggttac...
species | Oryza sativa |
transcript | LOC_Os01g69050.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG GCACAGGGTCCAGCTGCACCGAATGACTCGCCGCGCAAGCGGTTCTCCGGCEST: gi|66915994|gb|CX102842.1|CX102842
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... attaccacagGCACAGGGTCCAGCTGCACCGAATGACTCGCCGCGCAAGCGGTTCTCCGGC
EST: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG GCACAGGGTCCAGCTGCACCGAATGACTCGCCGCGCAAGCGGTTCTCCGGCEST: gi|117242441|gb|CT843008.1|CT843008
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... attaccacagGCACAGGGTCCAGCTGCACCGAATGACTCGCCGCGCAAGCGGTTCTCCGGC
EST: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG GCACAGGGTCCAGCTGCACCGAATGACTCGCCGCGCAAGCGGTTCTCCGGCEST: gi|87017095|gb|CI286231.1|CI286231
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... attaccacagGCACAGGGTCCAGCTGCACCGAATGACTCGCCGCGCAAGCGGTTCTCCGGC
EST: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG GCACAGGGTCCAGCTGCACCGAATGACTCGCCGCGCAAGCGGTTCTCCGGC
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... attaccacagGCACAGGGTCCAGCTGCACCGAATGACTCGCCGCGCAAGCGGTTCTCCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCTCGCCTTTTGGATTGCGAACTCGATTTCCAATCAAATGATCATCTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgccgccttcttgatcttctctgtttttttttcctttcatgccttatttttcatctgaatttttgagagtcttggggtatttgttccggttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA