1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCCGCCTCGCCTTTTGGATTGCGAACTCGATTTCCAATCAAATGATCATCTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgccgccttcttgatcttctctgtttttttttcctttcatgccttatttttcatctgaatttttgagagtcttggggtatttgttccggttac...
species | Oryza sativa |
transcript | LOC_Os01g69050.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG AATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTCEST: gi|13895924|gb|AU182260.1|AU182260
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
EST: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG AATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTCEST: gi|29673508|gb|CB669783.1|CB669783
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
EST: CTGCCGCGGATGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG AATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTCEST: gi|58587855|gb|CF986163.1|CF986163
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
EST: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG AATTTGTGTCAATCTGAATGGAACAGTCTTAGGCTCTGAAAAACATATTTCEST: gi|88367817|gb|CI570556.1|CI570556
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
EST: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATG AATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
genomic: CTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgc ... tctattgcagAATTTGTGTCAATCTGAATGGAACAGTCTTAAACTCTGAAAAACATATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCTCGCCTTTTGGATTGCGAACTCGATTTCCAATCAAATGATCATCTGCCGCGGTTGCGGCTCGTGGAGGAATTCGTGATTGCTCTCCCACCATGgtacggccgccgccttcttgatcttctctgtttttttttcctttcatgccttatttttcatctgaatttttgagagtcttggggtatttgttccggttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccgc