1 5' 3' |
...aattctagttgatcgatgtgtatattcctaggcatctaatcgagcacttttcatttcaaccaaagcatacatgctgatacatgaacttattatcatccagGGATATATATCTAGACGAACCCTAGCTCGATCTTGAGTGATTAAGTTGGGGATCAAGCTAGAGATCGAGACGATGTCGTCGTGGAACAGCCCGTACTACG
species | Oryza sativa |
transcript | LOC_Os01g68720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
acttttcatttcaaccaaagcatacatgctgatacatgaacttattatcatccagGGATATATATCTAGACGAACCCTAGCTCGATCTTGAGTGATTAAGTTGGGGATCAAGCTAGAGATCGAGACGATGTCGTCGTGGAACAGCCCGTACTACG
tgctgat putative branch site (score: 9)
aacttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattctagttgatcgatgtgtatattcctaggcatctaatcgagcacttttcatttcaaccaaagcatacatgctgatacatgaacttattatcatccagGGATATATATCTAGACGAACCCTAGCTCGATCTTGAGTGATTAAGTTGGGGATCAAGCTAGAGATCGAGACGATGTCGTCGTGGAACAGCCCGTACTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - -cgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc