1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATGTGTATAGCTTCGGAGTTGTTCTCTTGGAACTTCTGACAGGAAGAAAACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttcaccatatagtttactcatttatcttgtcgttaagttcagatcacatctgaatatctgatttagcagcttatagtgtctacagttaacaccttgattagtacaatgtagcaatacgcagcccaatcctttagtggctactttttacctagttctctgagcatgtctcagttctgttttgcag
species | Oryza sativa |
transcript | LOC_Os01g67340.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGG GCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGGEST: gi|88830237|gb|CI076493.1|CI076493
genomic: AACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttca ... tgttttgcagGCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGG
EST: AACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGG GCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGGEST: gi|86489312|gb|CI131945.1|CI131945
genomic: AACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttca ... tgttttgcagGCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGG
EST: AACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGG GCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGGEST: gi|88841590|gb|CI080846.1|CI080846
genomic: AACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttca ... tgttttgcagGCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGG
EST: AACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGG GCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGGEST: gi|86498509|gb|CI141142.1|CI141142
genomic: AACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttca ... tgttttgcagGCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGG
EST: AACCAGTAGATCACACAATCCCTAGAGGACAGCAGAGCTTGGTTACATGG GCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGGEST: gi|86427244|gb|CI072341.1|CI072341
genomic: AACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttca ... tgttttgcagGCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGG
EST: CAATGCCTAGAGGGCAGCAGGGCTTGGTTACATGG GCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGG
genomic: CAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttca ... tgttttgcagGCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGTGTATAGCTTCGGAGTTGTTCTCTTGGAACTTCTGACAGGAAGAAAACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttcaccatatagtttactcatttatcttgtcgttaagttcagatcacatctgaatatctgatttagcagcttatagtgtctacagttaacaccttgattagtacaatgtagcaatacgcagcccaatcctttagtggctactttttacctagttctctgagcatgtctcagttctgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT