1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAGTTTTCGGGTGAATTCATGGGGTCATGGAGATGTATGTACAGGCTTCGCTCTGTTTTCCAACCTCAGATGCGCATCTTTAGGCCATGAATTCTGAGAgtaagttagtcacttcctgtaccccccacttgttaatcctttatttctttagtgaagttccatagtttgataagtacatgtaatatatacttggttttgc...
species | Oryza sativa |
transcript | LOC_Os01g67170.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTCTGTTTTCCAACCTCAGATGCGCATCTTTAGGCCATGAATTCTGAGA ATTCATGCATTTCTGGACGTGCTAGCCGCTGCTACATGACCAAAGTACCGTEST: gi|88255751|gb|CI353622.1|CI353622
genomic: GCTCTGTTTTCCAACCTCAGATGCGCATCTTTAGGCCATGAATTCTGAGAgtaagttagt ... tattttgcagATTCATGCATTTCTGGACGTGCTAGCCGCTGCTACATGACCAAAGTACCGT
EST: GCTCTGTTTTCCAACCTCAGATGCGCATCTTTAGGCCATGAATTCTGAGA ATTCATGCATTTCTGGACGTGCTAGCCGCTGCTACATGACCAAAGTACCGTEST: gi|86493108|gb|CI135741.1|CI135741
genomic: GCTCTGTTTTCCAACCTCAGATGCGCATCTTTAGGCCATGAATTCTGAGAgtaagttagt ... tattttgcagATTCATGCATTTCTGGACGTGCTAGCCGCTGCTACATGACCAAAGTACCGT
EST: GCTCTGTTTTCCAACCTCAGATGCGCATCTTTAGGCCATGAATTCTGAGA ATTCATGCATTTCTGGACGTGCTAGCCGCTGCTACATGACCAAAGTACCGT
genomic: GCTCTGTTTTCCAACCTCAGATGCGCATCTTTAGGCCATGAATTCTGAGAgtaagttagt ... tattttgcagATTCATGCATTTCTGGACGTGCTAGCCGCTGCTACATGACCAAAGTACCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGTTTTCGGGTGAATTCATGGGGTCATGGAGATGTATGTACAGGCTTCGCTCTGTTTTCCAACCTCAGATGCGCATCTTTAGGCCATGAATTCTGAGAgtaagttagtcacttcctgtaccccccacttgttaatcctttatttctttagtgaagttccatagtttgataagtacatgtaatatatacttggttttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccac