1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagttctgaaaaaacaagagcatgagatatcttgtgcatcgttgtgcaaactagtaaataaacattcatcagcttctgttcagtaacatgttaaaaactagataatcagagtgtggaaactaaattgcagGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAA
species | Oryza sativa |
transcript | LOC_Os01g66860.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGC GCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCEST: gi|66925225|gb|CX112073.1|CX112073
genomic: CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCgtgagttctg ... taaattgcagGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTC
EST: CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGC GCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCEST: gi|58588097|gb|CF986405.1|CF986405
genomic: CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCgtgagttctg ... taaattgcagGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTC
EST: CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGC GCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTC
genomic: CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCgtgagttctg ... taaattgcagGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTC
ctgttcagtaacatgttaaaaactagataatcagagtgtggaaactaaattgcagGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAA
aactaaa putative branch site (score: 28)
ttaaaaactagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctgaaaaaacaagagcatgagatatcttgtgcatcgttgtgcaaactagtaaataaacattcatcagcttctgttcagtaacatgttaaaaactagataatcagagtgtggaaactaaattgcagGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA