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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATgtaagtgtacatttatgtgtatttatgtaaattaattcttctatatgatgcattttttagtatgtggacctaactgttttgatataatcactgttctgta...

Basic information

species Oryza sativa
transcript LOC_Os01g66730.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g66730.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G173989_T01 (Zea mays), 5'ss of exon 5
TATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATgtaagtgtacatttatgtgtatt--tatgtaaattaattcttctatat-gatgcattttttagtatgtggacctaactgttttgatataatcactgttctgta
||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||| ||||||||| |  |    ||||| | || || ||| | | | |||   | | | ||  |         | ||  | |  | ||  |   || ||  
TATATACCTTCTGTAGAAGATACCGTTCTTGGTATTGTGGTCGACACCAAACCAGACgtaagtatacatttatattcaggagtatgtgagttgatacttgtttctagatatttatctgaggctaccatggataatggct-gtcaaaactataattatg--

upper sequence: LOC_Os01g66730.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G802854_T01 (Zea mays), 5'ss of exon 5
TATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATgtaagtgtacatttatgtgtatt--tatgtaaattaattcttctatatgatgcattttttagtatgtggacctaactgtt-ttgatataatcactgttctgta
|||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||| |||||||||    |    ||||| | || || ||| | | | |   |||| |  |    |   |   |   |   ||  | ||  |   || ||  
TATAAACCTTCTGTAGAAGATACCGTTCTTGGTATTGTGGTCGACACCAAACCAGACgtaagtatacatttataatcaggagtatgtgagttgatacttgtttct-agatatttatatgaggctaccctggatcatggctgtcaaaactataattatg--

upper sequence: LOC_Os01g66730.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G540589_T01 (Zea mays), 5'ss of exon 3
TATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGT--------GGTTGACACCAAACCAGATgtaagtgtacatttatgtgtatttatgtaaattaattcttctatatgatgcattttttagtatgtggacctaactgttttgatataatcactgttctgta
|||||||||| ||||||||||||||||||||||  |||        |||||  ||||||||    |   ||      | ||| |   | || |    |       | | |  | ||  ||  |  | |  |  |  || | | ||| | ||    | |  |    
TATATACCTTATGTAGAAGATACAGTTCTTGGTACTGTCATACTGTGGTTGGAACCAAACctaggggtggtaatggatcatg-gccctaatatttgcttcacaaacca-acaaagcccttaattttgttagttcaaaattatattgttttatgatccggccc---