1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCTCCTCCCCATTCGCCACCTCTCCCTCTTCTTGACGACCGTCGACCGAGACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAGgtccgtagtcatttcttgttggcttgttgccctatgtagtagtgagtgagtagtcagtagtagagctggtggaaatttgttgtttatctctttaatttgt...
species | Oryza sativa |
transcript | LOC_Os01g66730.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAG GACCACCCGACGATTTGTTCCTGGAGCCGGCACCGCCCGCTCCACCGCACCEST: gi|88302557|gb|CI668403.1|CI668403
genomic: GACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAGgtccgtagtc ... cgtcaaatagGACCACCCGACGATTCGTTCCTGGAGCCGGCACCGCCCGCTCCACCGCACC
EST: GACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAG GACCACCCGACGATTCGTTCCTGGAGCCGGCACCGCCCGCTCCACCGCACCEST: gi|88333983|gb|CI645397.1|CI645397
genomic: GACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAGgtccgtagtc ... cgtcaaatagGACCACCCGACGATTCGTTCCTGGAGCCGGCACCGCCCGCTCCACCGCACC
EST: GACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAG GACCACCGGACGATTCGTTCCTGGAGCCGGCACCGCCCGCTCCACCGCACCEST: gi|29622394|gb|CB627405.1|CB627405
genomic: GACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAGgtccgtagtc ... cgtcaaatagGACCACCCGACGATTCGTTCCTGGAGCCGGCACCGCCCGCTCCACCGCACC
EST: GACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAG GACCACCCGACGATTTGTTCCTGGAGCCGGCACCGCCCGCTCCACCGCACC
genomic: GACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAGgtccgtagtc ... cgtcaaatagGACCACCCGACGATTCGTTCCTGGAGCCGGCACCGCCCGCTCCACCGCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCCTCCCCATTCGCCACCTCTCCCTCTTCTTGACGACCGTCGACCGAGACCCACGAGCTCCCTCTCCAGCTCTCCTGCTGCCCGGAAAAGTGCAAAGgtccgtagtcatttcttgttggcttgttgccctatgtagtagtgagtgagtagtcagtagtagagctggtggaaatttgttgtttatctctttaatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG