1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcaaagtcattttttggacgaataaccccttaaatgtttttttataaaaaatacatgcacatgatgtaactcattattttctattcttaattaatccagGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAG
species | Oryza sativa |
transcript | LOC_Os01g66050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAG GTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAAEST: gi|87006650|gb|CI295033.1|CI295033
genomic: CAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGgtcatcagtc ... attaatccagGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAA
EST: CAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAG GTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAAEST: gi|88980164|gb|CI026453.1|CI026453
genomic: CAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGgtcatcagtc ... attaatccagGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAA
EST: ATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAG GTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAAEST: gi|27546249|gb|CA764522.2|CA764522
genomic: ATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGgtcatcagtc ... attaatccagGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAA
EST: CAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAG GTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAAEST: gi|88989942|gb|CI018819.1|CI018819
genomic: CAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGgtcatcagtc ... attaatccagGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAA
EST: AATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAG GTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAA
genomic: AATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGgtcatcagtc ... attaatccagGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAA
taaaaaatacatgcacatgatgtaactcattattttctattcttaattaatccagGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAG
aattaat putative branch site (score: 22)
taactcattattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaaagtcattttttggacgaataaccccttaaatgtttttttataaaaaatacatgcacatgatgtaactcattattttctattcttaattaatccagGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatg