1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtaaacctgaaccccgaaattaatgatgacgatgtgttcttgtgatctctgaattaaattctgtgccctgtttggcccagGAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGCCTTGAGCCGGACCCTGACGCAGAGGAATGAACAAGATCAAGACCATTAACAGGCAGCCTG
species | Oryza sativa |
transcript | LOC_Os01g66000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCCCTGACATCCGCCCCAAAGTCAGGGTGATCGCGGAATGCGGCAACTG GAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGCCTTGAGCCGGEST: gi|86529934|gb|CI170140.1|CI170140
genomic: CTCCCTGACATCCGCCCCAAAGTCAGGGTGATCGCGGAATGCGGCAACTGgtacgtaaac ... tttggcccagGAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGCCTTGAGCCGG
EST: CTCCCTGACATCCGCCCCAAAGTCAGGGTGATCGCGGAATGCGGCAACTG GAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGCCTTGAGCCGGAEST: gi|89198397|gb|CI007457.1|CI007457
genomic: CTCCCTGACATCCGCCCCAAAGTCAGGGTGATCGCGGAATGCGGCAACTGgtacgtaaac ... tttggcccagGAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGCCTTGAGCCGGA
EST: CTCCCTGACATCCGCCCCAAAGTCAGGGTGATCGCGGAATGCGGCAACTG GAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGCCTTGAGCCGGA
genomic: CTCCCTGACATCCGCCCCAAAGTCAGGGTGATCGCGGAATGCGGCAACTGgtacgtaaac ... tttggcccagGAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGCCTTGAGCCGGA
atgacgatgtgttcttgtgatctctgaattaaattctgtgccctgtttggcccagGAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGCCTTGAGCCGGACCCTGACGCAGAGGAATGAACAAGATCAAGACCATTAACAGGCAGCCTG
ccctgttt CT-rich tract
tgaattaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtaaacctgaaccccgaaattaatgatgacgatgtgttcttgtgatctctgaattaaattctgtgccctgtttggcccagGAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGCCTTGAGCCGGACCCTGACGCAGAGGAATGAACAAGATCAAGACCATTAACAGGCAGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA