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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgatttatcctgtcaattggttaagttgttgtgtttagttatttttgggtgaaataccgtatggatcagtggctaaagtgaatttcttgtagACACTGTCGACGTCGGAGCGGCAGCCGCAGCCGGAGAAGAAGCCGCCACGGACGAGGCCGCCGCTGCCAGGCAAGGCCGTGGCCGCGCTGTGCGTGGCGA

Basic information

species Oryza sativa
transcript LOC_Os01g65590.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65590.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G119265_T02 (Zea mays), 3'ss of exon 1
gtttgtgatttatcctgtcaattggttaagttgttgtgtttagttatttttgggtgaaataccgtatggatcagtggctaaagtgaatttcttgtagACACTGTCGACGTCGGAGCGGCAGCCGCAGCCGGAGAAGAAGCCGCCACGGACGAGGCCGCCGCTGCCAGGCAAGGCCGTGGCCGCGCTGTGCGTGGCGA------
|| |||    |    |||||  |    || |||   |   |  |  |  || |  ||| |  |  | ||              ||  || | ||| |   | | |   | |||||||||||||||||| ||||||||||||| | ||   |||| |||||||| | || |||||||| || |||||||||||| |||      
gtgtgtatgatgatatgtcagctacgcaatttgg-attcctgctagtgcttcgacgaagtgactgacgg--------------tgttttccgtgttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGGCGCCGCTGTCCGGGAAGGCCGTCGCGGCGCTGTGCGTGACGAGCTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatttttgggtgaaataccgtatggatcagtggctaaagtgaatttcttgtagACACTGTCGACGTCGGAGCGGCAGCCGCAGCCGGAGAAGAAGCCGCCACGGACGAGGCCGCCGCTGCCAGGCAAGGCCGTGGCCGCGCTGTGCGTGGCGA
                                 ggctaaa  putative branch site (score: 3)
                                             tttcttgt  putative PPT
                                           aatttctt  TA-rich tract