1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGgtattactagctctcttgtatatgcacctccatcataattcaaatcctctgtgtaggcatgatcctagtttcctaggtaaaatatagagctttcaaaagt...
species | Oryza sativa |
transcript | LOC_Os01g65550.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAG TGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTEST: gi|58661299|gb|CK049979.1|CK049979
genomic: GCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGgtattactag ... acattcacagTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTT
EST: GCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAG TGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTEST: gi|33796649|gb|CF324192.1|CF324192
genomic: GCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGgtattactag ... acattcacagTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTT
EST: GCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAG TGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTEST: gi|58657530|gb|CK046210.1|CK046210
genomic: GCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGgtattactag ... acattcacagTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTT
EST: GCAATATGGAGGGCCATCGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAG TGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTEST: gi|58663945|gb|CK052631.1|CK052631
genomic: GCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGgtattactag ... acattcacagTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTT
EST: GCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAG TGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTEST: gi|58661245|gb|CK049925.1|CK049925
genomic: GCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGgtattactag ... acattcacagTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTT
EST: TATGGAGGGCCATTGTCTCTTGCAGACGAGTCCTCAAGCCCAAGCAG TGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTT
genomic: TATGGAGGGCCATTGTCTCTTGCAG-CGAGTCCTCAAGCCCAAGCAGgtattactag ... acattcacagTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGgtattactagctctcttgtatatgcacctccatcataattcaaatcctctgtgtaggcatgatcctagtttcctaggtaaaatatagagctttcaaaagt
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