1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTGATTCTCTGCTCTCCTTCTAATCCAACTGGATCAGTATATCCAAAGGAGCTGCTTGAAGAAATAGCTGACATAGTCAAGAAGTATCCTAGGCTTCTTgtaagtgttttagtttccccctttctttaaccagtttacattttcaccgcatgatgattatggcctatcatcttgtctgtctttcag
species | Oryza sativa |
transcript | LOC_Os01g65090.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCTTGAAGAAATAGCTGACATAGTCAAGAAGTATCCTAGGCTTCTT GTTTTGTCTGATGAGATTTATGAGCATATCATCTATCAGCCAGCAAAACACEST: gi|86849106|gb|CI295847.1|CI295847
genomic: AGCTGCTTGAAGAAATAGCTGACATAGTCAAGAAGTATCCTAGGCTTCTTgtaagtgttt ... tgtctttcagGTTTTGTCTGATGAGATTTATGAGCATATCATCTATCAGCCAGCAAAACAC
EST: CAAGAAGTATCCTAGGCTTCTT GTTTTGTCTGATGAGATTTATGAGCATATCATCTATCAGCCAGCAAAACACEST: gi|29645872|gb|CB650879.1|CB650879
genomic: CAAGAAGTATCCTAGGCTTCTTgtaagtgttt ... tgtctttcagGTTTTGTCTGATGAGATTTATGAGCATATCATCTATCAGCCAGCAAAACAC
EST: AGCTGCTTGAAGAAATAGCTGACATAGTCAAGAAGTATCCTAGGCTTCTT GTTTTGTCTGATGAGATTTATGAGCATATCATCTATCAGCCAGCAAAACACEST: gi|109974688|gb|DT807048.1|DT807048
genomic: AGCTGCTTGAAGAAATAGCTGACATAGTCAAGAAGTATCCTAGGCTTCTTgtaagtgttt ... tgtctttcagGTTTTGTCTGATGAGATTTATGAGCATATCATCTATCAGCCAGCAAAACAC
EST: AGCTGCTTGAAGAAATAGCTGACATAGTCAAGAAGTATCCTAGGCTTCTT GTTTTGTCTGATGAGATTTATGAGCATATCATCTATCAGCCAGCAAAACAC
genomic: AGCTGCTTGAAGAAATAGCTGACATAGTCAAGAAGTATCCTAGGCTTCTTgtaagtgttt ... tgtctttcagGTTTTGTCTGATGAGATTTATGAGCATATCATCTATCAGCCAGCAAAACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATTCTCTGCTCTCCTTCTAATCCAACTGGATCAGTATATCCAAAGGAGCTGCTTGAAGAAATAGCTGACATAGTCAAGAAGTATCCTAGGCTTCTTgtaagtgttttagtttccccctttctttaaccagtttacattttcaccgcatgatgattatggcctatcatcttgtctgtctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT