1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAAAGTTCTGTTTATGTTAAGCCTGATATAGAAGAGTTGGAAATGCTTCTGGAAGCTTACTTTGTGCAGATCGATGGAACGCTGAATACCCTGTACCATgtatgttcatcctcctcctttactaagggcttcatcttttgcctataataaatcagccattgccaaattttaatataaaagttaattttagagtttattt...
species | Oryza sativa |
transcript | LOC_Os01g64890.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGCTTACTTTGTGCAGATCGATGGAACGCTGAATACCCTGTACCAT ATCCGTGAATACGCGGACGACACGGAGGATTACATCAACATAATGCTGGACEST: gi|86500343|gb|CI142976.1|CI142976
genomic: TGGAAGCTTACTTTGTGCAGATCGATGGAACGCTGAATACCCTGTACCATgtatgttcat ... tggaacaaagATCCGTGAATACGCGGACGACACGGAGGATTACATCAACATAATGCTGGAC
EST: TGGAAGCTTACTTTGTGCAGATCGATGGAACGCTGAATACCCTGTACCAT ATCCGTGAATACGCGGACGACACGGAGGATTACATCAACATAATGCTGGACEST: gi|88224709|gb|CI224558.1|CI224558
genomic: TGGAAGCTTACTTTGTGCAGATCGATGGAACGCTGAATACCCTGTACCATgtatgttcat ... tggaacaaagATCCGTGAATACGCGGACGACACGGAGGATTACATCAACATAATGCTGGAC
EST: AATACCCTGTACCAT ATCCGTGAATACGCGGACGACACGGAGGATTACATCAACATAATGCTGGAC
genomic: AATACCCTGTACCATgtatgttcat ... tggaacaaagATCCGTGAATACGCGGACGACACGGAGGATTACATCAACATAATGCTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAAGTTCTGTTTATGTTAAGCCTGATATAGAAGAGTTGGAAATGCTTCTGGAAGCTTACTTTGTGCAGATCGATGGAACGCTGAATACCCTGTACCATgtatgttcatcctcctcctttactaagggcttcatcttttgcctataataaatcagccattgccaaattttaatataaaagttaattttagagtttattt
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctc