1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggaccctttttaacttacattttttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGGTTAATTTTGCT
species | Oryza sativa |
transcript | LOC_Os01g64650.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAEST: gi|86531269|gb|CI171475.1|CI171475
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAEST: gi|58596352|gb|CK006880.1|CK006880
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
attaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGGTTAATTTTGCT
tcttgat putative branch site (score: 4)
tattgtttttcttttc putative PPT
atattgtttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaccctttttaacttacattttttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGGTTAATTTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA