1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttagctattatgcacacagaaacctccctgcaatacttgtttgttgcatttagtagattttgacaatatctgtacacactttgtaaacagGCATCTGAGATTCTTAAAAGCCCATACCTTCAACCTTATGTTAATCAATACCGCCCATTTGCTGATATATCACATCCCATTCACTCACTGGAGAAACCCA
species | Oryza sativa |
transcript | LOC_Os01g64490.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AATCACTTATCAAAAGCATGCTCAGGAAGAGTCCTGAACATCGGCCTACG GCATCTGAGATTCTTAAAAGCCCATACCTTCAACCTTATGTTAATCAATACEST: gi|58612910|gb|CK040622.1|CK040622
genomic: AATCACTTATCAAAAGCATGCTCAGGAAGAGTCCTGAACATCGGCCTACGgttagctatt ... ttgtaaacagGCATCTGAGATTCTTAAAAGCCCATACCTTCAACCTTATGTTAATCAATAC
EST: AATCACTTATCAAAAGCATGCTCAGGAAGAGTCCTGAACATCGGCCTACG GCATCTGAGATTCTTAAAAGCCCATACCTTCAACCTTATGTTAATCAATAC
genomic: AATCACTTATCAAAAGCATGCTCAGGAAGAGTCCTGAACATCGGCCTACGgttagctatt ... ttgtaaacagGCATCTGAGATTCTTAAAAGCCCATACCTTCAACCTTATGTTAATCAATAC
cttgtttgttgcatttagtagattttgacaatatctgtacacactttgtaaacagGCATCTGAGATTCTTAAAAGCCCATACCTTCAACCTTATGTTAATCAATACCGCCCATTTGCTGATATATCACATCCCATTCACTCACTGGAGAAACCCA
ttttgac putative branch site (score: 13)
atttagtagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctattatgcacacagaaacctccctgcaatacttgtttgttgcatttagtagattttgacaatatctgtacacactttgtaaacagGCATCTGAGATTCTTAAAAGCCCATACCTTCAACCTTATGTTAATCAATACCGCCCATTTGCTGATATATCACATCCCATTCACTCACTGGAGAAACCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA