1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacacatgttgctccgaaccttttagtttctatgtatcgttaagacattttgcatggagattgaaatttttatgaataatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACGCTCGTCTCAAAGAGGCAGAG
species | Oryza sativa |
transcript | LOC_Os01g64000.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|86492277|gb|CI134910.1|CI134910
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|5701698|gb|AU063505.2|AU063505
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|86497616|gb|CI140249.1|CI140249
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCCAGGAGAAEST: gi|88964713|gb|CI070059.1|CI070059
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAG-CAGGAGAA
EST: ATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|27548974|gb|CA766860.2|CA766860
genomic: ATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|86601832|gb|CI258508.1|CI258508
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|88841546|gb|CI080802.1|CI080802
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|9457318|gb|AU063339.2|AU063339
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: CATTGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|88842196|gb|CI081452.1|CI081452
genomic: CAT-GATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGT-GAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|8527686|gb|AU092501.1|AU092501
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|8528101|gb|AU092916.1|AU092916
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: CCGTGAGTCCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|86522773|gb|CI162979.1|CI162979
genomic: CCGTGAGT-CAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|8528266|gb|AU093081.1|AU093081
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACEST: gi|218497745|gb|FG966598.1|FG966598
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAACTCGAEST: gi|87029252|gb|CI276520.1|CI276520
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGA
EST: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAG GCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
genomic: GCATGATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGgtacacatgt ... aatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAAC
tgtatcgttaagacattttgcatggagattgaaatttttatgaataatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACGCTCGTCTCAAAGAGGCAGAG
agattgaaatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacatgttgctccgaaccttttagtttctatgtatcgttaagacattttgcatggagattgaaatttttatgaataatgctacagGCTTATACGGTGGAGCTCGAAGCTGAACTGAACTATCTCAAGCAGGAGAACGCTCGTCTCAAAGAGGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG