1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttttatatttatctcttatgatattcgccgcaatgcacagtacctttagctagtttaacagaaaaaaactgatcatgctgctgctgtataaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACCGCTGCTGAGCCTGCCGTTCGCGTTCGCGTCGCTGGGGTGGGCGGCGGG
species | Oryza sativa |
transcript | LOC_Os01g63854.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAG GGTCATGGCTGCACTGCGGGTGCCACCTGACGACGTCCATCGTGGCGCCACEST: gi|66917426|gb|CX104274.1|CX104274
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACEST: gi|14191742|gb|AU183953.1|AU183953
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACEST: gi|29635884|gb|CB640893.1|CB640893
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACEST: gi|88388063|gb|CI590339.1|CI590339
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACEST: gi|88363347|gb|CI643205.1|CI643205
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCACTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACEST: gi|88587178|gb|CI704907.1|CI704907
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCACTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACEST: gi|88575704|gb|CI669849.1|CI669849
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACEST: gi|13807900|gb|AU182144.1|AU182144
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACEST: gi|14191788|gb|AU183999.1|AU183999
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACEST: gi|88394737|gb|CI622611.1|CI622611
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
EST: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAG GGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
genomic: CGTCGGCCAGAAGCTCGACGCCGGGGCTCTCTTCGTCCTTCAGTCCAAAGgtgcgttcgt ... aaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCAC
tttagctagtttaacagaaaaaaactgatcatgctgctgctgtataaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACCGCTGCTGAGCCTGCCGTTCGCGTTCGCGTCGCTGGGGTGGGCGGCGGG
aactgat putative branch site (score: 1)
tttaacagaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttatatttatctcttatgatattcgccgcaatgcacagtacctttagctagtttaacagaaaaaaactgatcatgctgctgctgtataaatgcgcagGGTCATGGCTGCACTGCGGGTACCACCTGACGACGTCCATCGTGGCGCCACCGCTGCTGAGCCTGCCGTTCGCGTTCGCGTCGCTGGGGTGGGCGGCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - -cttatga
- - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgct