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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTGTCCGCGCCCGCGGACACATGCTGCAGGAGCTCAAGCTCGACAAGTGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAGgtaacccaggagttctctctttcttgtactactcatctgtaacagtgattttttttacctccaatacttgcctaagcgaaagttagcagcagcaactgag...

Basic information

species Oryza sativa
transcript LOC_Os01g63420.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G125411_T01 (Zea mays), 5'ss of exon 1
CCCTTGTCCGCGCCCGCGGACACATGCTGCAGGAGCTCAAGCTCGACAAGTGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAGgtaac-ccaggagttctctctttcttgtact---actcatctgt--aacagtgattttttttacctccaatacttgcctaagcgaaagttagcagcagcaactgag
  || |||||||| ||||| |||||||| |||| |||||||||||||||||||  ||||||||| || ||||||||| |||||||||| ||||| ||||||||   || | | || | |   || |||| |     |||||||   | | |  |     | |   | |                |  ||  || |    |      
TGCTCGTCCGCGCGCGCGGCCACATGCTACAGGTGCTCAAGCTCGACAAGTGCTCCGGCTTCTCAACAGACGCCCTCTGCCTCGTCGCGCGCTCCTGCAGgtagtacccgtacttatgttcgtcgtgtagtcgtgttcatctgctgatctgcaacgccgtgtttgttcggcctgctttcccattacggtgtgcggggaaa------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58655865|gb|CK044545.1|CK044545
EST:     TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAG                         ATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
genomic: TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAGgtaacccagg ... atgtcaacagATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
EST: gi|117242280|gb|CT848299.1|CT848299
EST:     TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAG                         ATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
genomic: TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAGgtaacccagg ... atgtcaacagATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
EST: gi|300215787|gb|HO088413.1|HO088413
EST:     TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAG                         ATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
genomic: TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAGgtaacccagg ... atgtcaacagATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
EST: gi|58664778|gb|CK053464.1|CK053464
EST:     TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAG                         ATCCCTGAGAACTTTATTTCTGGAAGAGTGC-ATATTACTGATAAGGGTGG
genomic: TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAGgtaacccagg ... atgtcaacagATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
EST: gi|29674615|gb|CB670890.1|CB670890
EST:     TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAG                         ATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
genomic: TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAGgtaacccagg ... atgtcaacagATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
EST: gi|11442919|gb|BF430818.1|BF430818
EST:     TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAG                         ATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG
genomic: TGCATCGGCTTCTCCACTGACGCCCTCCGCCTCGTCGCCCGCTCGTGCAGgtaacccagg ... atgtcaacagATCCCTGAGAACTTTATTTCTGGAAGAGTGCCATATTACTGATAAGGGTGG