1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatatttcctgtatacaagcattgattaattgtgtttgaattagtatatgccatattacaacgagatgtcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCAAGAAGCTACGAAGACTCCGAATTGAGCGGGGTGATGATGATCCAGGTC
species | Oryza sativa |
transcript | LOC_Os01g63420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCEST: gi|58679194|gb|CK067881.1|CK067881
genomic: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
EST: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCEST: gi|58682067|gb|CK070754.1|CK070754
genomic: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
EST: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCEST: gi|218479840|gb|FG954721.1|FG954721
genomic: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
EST: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCEST: gi|58652978|gb|CK041658.1|CK041658
genomic: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
EST: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCEST: gi|29674615|gb|CB670890.1|CB670890
genomic: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
EST: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCEST: gi|58687112|gb|CK075799.1|CK075799
genomic: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
EST: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTCGTTGGTGATACATGCEST: gi|3768208|gb|AU032235.1|AU032235
genomic: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
EST: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCEST: gi|58682547|gb|CK071234.1|CK071234
genomic: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
EST: GATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCEST: gi|58661283|gb|CK049963.1|CK049963
genomic: GATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
EST: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAG GTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
genomic: AAGATCATTGTCAGATTATTGCAAAATGTCCCAATCTACTAATTCTTGAGgtaatatttc ... tcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGC
gattaattgtgtttgaattagtatatgccatattacaacgagatgtcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCAAGAAGCTACGAAGACTCCGAATTGAGCGGGGTGATGATGATCCAGGTC
gattaat putative branch site (score: 3)
tgtcctc putative PPT
tttgaattagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatttcctgtatacaagcattgattaattgtgtttgaattagtatatgccatattacaacgagatgtcctcaacagGTGAGGAACGTGATAGGAGATAGAGGGCTAGAAGTTGTTGGTGATACATGCAAGAAGCTACGAAGACTCCGAATTGAGCGGGGTGATGATGATCCAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA