1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtggctgtcccatgtcttttaacttatctctgcaaccattataatcatgatgtaacaatgatgtttttcttttctttcctctagGCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGTCCAAATTATCACTGTCGGGAG
species | Oryza sativa |
transcript | LOC_Os01g63060.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTT GCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGTEST: gi|2312423|gb|C28578.1|C28578
genomic: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTTgtaagtggct ... tttcctctagGCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGT
EST: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTT GCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGTEST: gi|29646376|gb|CB651383.1|CB651383
genomic: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTTgtaagtggct ... tttcctctagGCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGT
EST: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTT GCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGTEST: gi|300215948|gb|HO088574.1|HO088574
genomic: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTTgtaagtggct ... tttcctctagGCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGT
EST: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTT GCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGTEST: gi|117231357|gb|CT842216.1|CT842216
genomic: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTTgtaagtggct ... tttcctctagGCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGT
EST: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTT GCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGT
genomic: AACGTTTCTACACTGTTCTACTCTGGCGCAGGGTGCTGGCCTTTTTAGTTgtaagtggct ... tttcctctagGCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGT
ctgcaaccattataatcatgatgtaacaatgatgtttttcttttctttcctctagGCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGTCCAAATTATCACTGTCGGGAG
atgtaac putative branch site (score: 7)
tgatgtttttcttttc putative PPT
attataatcatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggctgtcccatgtcttttaacttatctctgcaaccattataatcatgatgtaacaatgatgtttttcttttctttcctctagGCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGTCCAAATTATCACTGTCGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC