Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86530502|gb|CI170708.1|CI170708EST: ACGCCAACATCAAGCCCGTCATCACCTCCACCG TGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
genomic: ACGCCAACATCAAGCCCGTCATCACCTCCACCGgtaattcgct ... ctgtgagcagTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
EST:
gi|88281566|gb|CI402962.1|CI402962EST: GGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCG TGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
genomic: GGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGgtaattcgct ... ctgtgagcagTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
EST:
gi|88517933|gb|CI444822.1|CI444822EST: CCGTCATCACCTCCACCG TGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
genomic: CCGTCATCACCTCCACCGgtaattcgct ... ctgtgagcagTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
EST:
gi|88478182|gb|CI415453.1|CI415453EST: GAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCG TGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
genomic: GAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGgtaattcgct ... ctgtgagcagTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
EST:
gi|86534394|gb|CI174600.1|CI174600EST: GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCG TGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
genomic: GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGgtaattcgct ... ctgtgagcagTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
EST:
gi|88482346|gb|CI419617.1|CI419617EST: GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCG TGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
genomic: GGAGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGgtaattcgct ... ctgtgagcagTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcattcgtcgagaatttttcaatattttttcttgattatgctgtctgtgagcagTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACA
tcttgat putative branch site (score: 4)
agaatttttcaatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacgaatataagatgaatactccgtattctatatgacgatatctgctcattcgtcgagaatttttcaatattttttcttgattatgctgtctgtgagcagTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAGTTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG