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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGCACACATTTTGCGAGGCCTAACTGGAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctcttttttcagcgaacatcgtcgatgcaacaattttgagctttgcagtaacggttgttaacaaatccataaatatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g61880.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86481607|gb|CI124240.1|CI124240
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|88270393|gb|CI385651.1|CI385651
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|86865969|gb|CI335558.1|CI335558
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTC-AGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|86887101|gb|CI325916.1|CI325916
EST:     AGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACCCATAGG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTT
genomic: AGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATA-Ggtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTT
EST: gi|87039381|gb|CI194003.1|CI194003
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|29688221|gb|CB684496.1|CB684496
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|86519889|gb|CI160095.1|CI160095
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|86484673|gb|CI127306.1|CI127306
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|86480722|gb|CI123355.1|CI123355
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|27728130|gb|CB035350.1|CB035350
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|86834297|gb|CI344057.1|CI344057
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGGTTTTCTATTGTGGATCCCCTACACTCACCAAACAACTCAAGGATCTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGT-GTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTT
EST: gi|88962578|gb|CI097730.1|CI097730
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|86478047|gb|CI120680.1|CI120680
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|87028963|gb|CI351266.1|CI351266
EST:     AGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGGCATAG                         GTGTTTTCTATTGTTGATCCCCTACACTCACGAAACAACTCAAGGATCTT
genomic: AGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCAC-GCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTT
EST: gi|86881864|gb|CI324129.1|CI324129
EST:     GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
EST: gi|88259648|gb|CI363941.1|CI363941
EST:     GAGAAAGGTGTTCTCTGACTTGCCGAATGCCCACAAAAACTCACGCATAG                         GTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT
genomic: GAGAAAGGTGTTCTCTGACTTGGCGAATGCCCACAAAAACTCACGCATAGgtgagcctct ... aaatatgcagGTGTTTTCTATTGTGGATCCCCTACACTCACGAAACAACTCAAGGATCTTT