Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88218125|gb|CI217974.1|CI217974EST: TGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: TGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|86497502|gb|CI140135.1|CI140135EST: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|113930856|gb|DQ883962.1|DQ883962EST: CTNTGCTNATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|38470819|gb|CF954950.1|CF954950EST: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|22307487|gb|BQ908709.1|BQ908709EST: ATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: ATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|218482075|gb|FG958767.1|FG958767EST: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|113931024|gb|DQ884118.1|DQ884118EST: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|89192609|gb|CI049907.1|CI049907EST: ATCCGACTATTCAG GTGGNTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: ATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|88993604|gb|CI110425.1|CI110425EST: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTAGTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|22304774|gb|BQ905996.1|BQ905996EST: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|88226852|gb|CI224837.1|CI224837EST: TTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: TTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|88245735|gb|CI245584.1|CI245584EST: GATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: GATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|86426259|gb|CI071356.1|CI071356EST: ATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GT-GGCTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: ATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|113930857|gb|DQ883963.1|DQ883963EST: TTGCTGATTGGGGATAACCGCCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTTCAAAAAT
genomic: TTGCTGATTGGGGATAA-CG-CTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCAC-TTCAAAAAT
EST:
gi|86426173|gb|CI071270.1|CI071270EST: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
EST:
gi|87024301|gb|CI257042.1|CI257042EST: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAG GTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
genomic: CTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
73 (upstream exon),
70 (downstream exon)
Score:
42CCAGATAAACTCAGGCGCAGAAAATGCTTATAATTCTTCACAGTGTGATTCTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGgtaactgctc ... gtgataacagGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTATTTCCAACAAAGGGGGATAGACCATGAAA
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